Scaffold Ga0210395_10000007

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000007
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 356934
• Total Scaffold Genes: 277
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 215 (77.62%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F000749	Metagenome / Metatranscriptome	908	Y
F005152	Metagenome / Metatranscriptome	410	Y
F012141	Metagenome / Metatranscriptome	283	Y
F045275	Metagenome / Metatranscriptome	153	Y
F047844	Metagenome / Metatranscriptome	149	Y
F082246	Metagenome / Metatranscriptome	113	Y
F101524	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000007100	F101524	AGGAGG	MRDDKQKRSLMKKLGDAIRRLLGLKPSPPPADPYAYSMAPLRRGPKGRSGAAVAEIEQSDHEDDSYRSFPPRR
Ga0210395_10000007101	F012141	GGAG	MRGERYWIWVLVRLAVGVAIVGWAASYLVPGSGEKEFQKTLDAMKQVHSFRVAFTSSPGTQHDEMLWEVDCTRDLLHYQWHVTDTAMPASEMSRDEVHMATQEFQRESDGSWSKPKFASGHPPSWYCGALAQGNDNNLMPRISTMIKRGILQKGDKKTVNGVPCREWLVTMKGAPGGLEHDTVCLGLEDHLPYEMTVDWQYSRSSFSDYNTPISFDVPEAVQAASVSTGSN
Ga0210395_10000007102	F047844	GGA	MPAAAIVTARSLFSVRGVLAAVACLACLCAALLAQDSESSDSLGDVARQTRSQHASASDDKSSKAQDLVEEMQQEQEAAEDAPTGFKNYNAGDYRLYVPFPYSLEGRENGGAVLLGSRLGVTNTEVLAGMPIPIPANLTDANLENLARQLASQYGSQANCLAIKQGLHKAFRCSWQTSPRLLGHEVWGSMEFIVSSSNAGSSNVISINAGARGAGPSSLIPVMCVSPDDSHQSCVIYDTYGRNTCSDRDRQLYGWDYRKAQAAHDANYRDERSTGQICDQIIYPSIQLKEDIVVHPASIPEGKALRPVSAVVPQDSSVVAAESQTASLADLARLTRQAPHPEARATLDSAEGVRMAPAGFQSFVLQYCLNPQQCSEASVVIPEKAEVVSRTNGQYIFKSALNGESIMLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKPDSVSTQDLTIEGRLALMTRFRYQRDQKRWWIGERLLIENQGAQFLLGCTAPEEHFADAEVLCTTLVNSLRLP
Ga0210395_10000007224	F000269	GAG	MEFSSKRLQRIYPLVPSLLLLTVGLAAASEQPASKPTDVPATVIAHLPLPQATGSQMLLQKENGKQYLYVQQAAKQGFMIVDVSKPDQPNLLKRTAQSEQATAGNLEIVSPDVAIAQAPEKTPTTLTNTDHPTETVRVLDLTDPRNPKTLDTFNKVTSLLPDGGHGLIYLTNNDGLWILRYNRPSRFEPAKKKPPCDSESEISAMPPDCD
Ga0210395_10000007225	F000323	AGGAG	MRKFWFVLLLSGSFLLAQDSTPANTQQEVKASKGEITVQGCVGRSSGDYILTKQDPGVTYELHATGKARLGQYLGQRVEVIGKESPTLSTSSDALNKTGSASSVTINVRVIRTVDKECVA
Ga0210395_10000007264	F005152	GGA	MSYHIMKITIIVLFILCTGLWTGSAFGQTGVSVLSNQPQVVESASHPLHAETHAMATETPLAGGGGYTYAQGERPLWEFGPVSEPTPLGDVARAYRKEKQTAKKAEIILDKQGS
Ga0210395_1000000745	F082246	N/A	MGRMSEMPGPLYKQQGGASLFDKDATRFGEFDRSSLVASEEVKSVMFFEVRNLPAQSRLAYVQSESSSREIQFLSEDIDREKVADFNVGEHCSKPRLRVW
Ga0210395_1000000772	F045275	GGA	MQSFDFQIVLNCPLETVFAIYVDTERWCNRNLFGEIRWVQGKPWEEGSRLRIETRSPIRTSIDQVVQHFKANESVSYLSHVIGITCETRVTFTPVSASQTAVNVVMQLVGTASRALDFALAPAIKKATRGFFEELRKECEAASAGAAD
Ga0210395_1000000785	F000749	AGGAG	MKNRGTSPTLDSNVTIRVSGKLFQGHLPYLEQLVHSATECRLWPQLNLAHLEELDRPALFYLIDGEHRDFSIVFCPRFIRDWIEHERDRAVA