Scaffold Ga0210395_10000006

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000006
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 370563
• Total Scaffold Genes: 305
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 239 (78.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000872	Metagenome / Metatranscriptome	851	Y
F001520	Metagenome / Metatranscriptome	679	Y
F001632	Metagenome / Metatranscriptome	660	Y
F021951	Metagenome / Metatranscriptome	216	Y
F062809	Metagenome / Metatranscriptome	130	Y
F084630	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000000614	F001520	GGAG	MNAVKFLIAAYVATWVIHGVYIGSLVQRFSRLRRESKELSKGK
Ga0210395_10000006175	F062809	GGAGG	MKKPGTHQVAQALICFVGVFVALQNTRGLEGTEFSGGWLTGPLLSMADIGIVLFLLALVVTFMFPRVAAAIGLASSLLCLPLYLYSIAPVPFSQIFGSGHEFKVQPSGGFHWDRWALAGVLTLAVTTYVCLRGVAAASREQTLERG
Ga0210395_10000006240	F001632	AGGAG	MFLKSWKFMLAVLCIAVPARAADPTEQMAYCSYVMEQALAQRDLLRTPVASAGMTQPEEGLPMQLVAGASVGLSEIRKASLTMDVARKNCELYKATTGAEQDVQYALTSLEKEALRNRLVLIEQASKSLDALMEKTAKMVEAQNATRLMLFTLQTTKIKLDADHADTASKISALYVPPLSDKPLKNLVAEKLSSEANEQKALDKLSRQNNWDVALSVGVHQQVNPVSQNPQPYGAVSVNYNFASRAINKHLDRSVEAYGEWKKVQEGDVVRNMEVLRQQLVDSVSAQESKLKSLQEESGQIDKNLHLVDNPDTSAAFDFHNQLTAAELLLQVETADASFRIHRLREFLARNY
Ga0210395_10000006269	F084630	N/A	MRVTEVRCSRNKLSLMFSDHMNLKPLEPRTESHGKDLMANAGIHRSQIAKRRSSRIALNAPVGLSGEDLQKGSFTISAKATNLNKHGAAIHLNRELKVGSTVIVRNKSGTQISARVVAQLSTLQGVLCYAIEFAEPDDGVKTFWGITFPSVESRGTSAQAAEQSGIMRRRRAIASQQD
Ga0210395_10000006281	F000872	GGAGG	VSKTAAVVLTFVGFILCSLPMSAQFKFNGLLPNGNVYGGVSYGQLTDVINRQSYRGFVGSFEALPFTRFPRIGLVADVSGFYRHGSYPVTQYNFVAGPRLSFSYGKWRPFADAMVGIRHVNSDGFIYNPLSIDIGGGADYKLPFRNFSWRLQGDYMHGHYASANQDDYRASTGIVWRF
Ga0210395_1000000634	F021951	N/A	MDPITTVTGTWTIAKTAGEISKKLYEFGKSLKDRELKQQIDEILDNVRELKQSAAQLEDENRELREKLRFKTDDYEFRTPFYYEKSHQDRPLCPKCFAKNTPAPMGDPEHGSFEYRRCLVCGNTVQIGEAVRQARIRPIVGRYT