Scaffold Ga0210395_10000004

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000004
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 396819
• Total Scaffold Genes: 309
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 255 (82.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019522	Metagenome / Metatranscriptome	229	Y
F040215	Metagenome / Metatranscriptome	162	Y
F074603	Metagenome	119	N
F104806	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000004108	F104806	GGAG	MPKISPKERKKLDRFHELHKAKLRRKYPEIHGKKLDYITQRFEDNDGGGWLYINLYFTDGTNFSMVFSMNNPAIVPRCIEYGDMSTGDYENIRTYYYREEKR
Ga0210395_10000004109	F074603	GAGG	MPQFPAPLPPGEIPPLTCFQQFILCVALVTISTALLSFLLPRPLFCKLFKIAFPFMPEGIGDDDAKD
Ga0210395_10000004226	F019522	AGGCGG	MTLSYEPAKQKPPEPGQNRARSFGTITIPGTPVGAIVSAGLVVICWFALPLSHLFILGTGGLGLIVGLLLYWKHRNPRE
Ga0210395_1000000457	F040215	GAG	MNRGFFIILVPAFLVAIGYIVVFRYIGISPAYWRLILPVVLFAGAMWWFGRRGRKEVTK