Scaffold Ga0210395_10000003

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 446828
• Total Scaffold Genes: 400
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 265 (66.25%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000870	Metagenome / Metatranscriptome	851	Y
F002320	Metagenome / Metatranscriptome	571	Y
F005270	Metagenome / Metatranscriptome	406	Y
F005581	Metagenome / Metatranscriptome	396	Y
F029851	Metagenome / Metatranscriptome	187	Y
F042507	Metagenome / Metatranscriptome	158	Y
F063420	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000003112	F002320	GAG	MRRTVKIASEIDAKLYQELIAVAKESGQPQRFVLERALDHYLHNVVPSQRLVRPEVMAAYRGSNEKYRKLYKKLAK
Ga0210395_10000003123	F029851	GGAGG	MVLKRALSGLSALTFALTFASGMLFAQDSGPKVAHTVHSGPVTPAKATPSSLQVIFTNISPVHTAAYNDTTGYYVLGPDNSVGLPEQGIAVPFSPQEAAHVTELTVAVGWISGTKLVNIGLYSDNSGEVGTLLASAENSNIPTFGLCCDLVSVTIPSTSVKGGIQYWIVASSDDTNAPDFTGVFEASNLAIISGNVGLAGWSSFTTNTPAAAARGTIP
Ga0210395_10000003191	F005270	GAGG	MTPKLDPTPAAEISSADLASVVASLEPDQLISEKEKHHCPRRRLTRTEMIIFWALRFYLIFMFGVVIYQILTSAR
Ga0210395_10000003241	F042507	GGA	MRILNAASRRALDLPVVHAEPSEHDHLVTLALEVNQKQVGQLYREWYGIADVIKVSSGAALASAWTAAHPPAGVPLEESRAAARA
Ga0210395_10000003366	F000136	GAGG	MAKSKLRILYGEGDGEVLAAQTAAMEKAGHIVAQAQGRKAVDEALKKTQFDLVVLGATLTRNDRHHLPYMVKKASSETSVLVMHADGSRHPYVDACTDTGASLESVLNRIESMNISGMIPAAAAAAAGR
Ga0210395_10000003379	F000870	N/A	LRTGAASLVDNDTSDHRTLQQKTARELIWTSTHSFHGWTCSQCEWNSSLPTLLTDPAAKTAFDRLAAAKFKDHKCSDHLSRQGSADDADSFTPRIRKLVTQGFKPKDAVELFLQEVALEYRNQPKVLAQAKTDAEDFLRRVRAGLI
Ga0210395_10000003394	F005581	N/A	MHLTNMTKSTVAIFDEKYRVVAVESQCLVIRGVRSGKVLTIVNPDPETPLSAADYPPGKLIALTDPSAAPLN
Ga0210395_1000000391	F063420	AGGAG	VAENNNHSDSATDKDTLYMLGGVACIVFGAGLILSNPIVRRYLGQMGVGSLVQGALPDLDRYIKLRSM