Scaffold Ga0210395_10000001

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000001
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 601673
• Total Scaffold Genes: 510
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 324 (63.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000260	Metagenome / Metatranscriptome	1431	Y
F000867	Metagenome / Metatranscriptome	854	Y
F008017	Metagenome / Metatranscriptome	340	Y
F013218	Metagenome / Metatranscriptome	273	Y
F014416	Metagenome / Metatranscriptome	263	Y
F015366	Metagenome / Metatranscriptome	255	Y
F094757	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000001103	F094757	GAG	MKIGRSIVACLLLSLACAYGQMTIISTRLKDPEVKPEQRTATIVHYEKMRVTARATVRVLVLAMQNTDGSTARLNAAIDNEQDIVDWANWCILALRDKTDEAKACVFQPDPK
Ga0210395_10000001231	F014416	AGGAG	MRSVSMQRRTLTDGEIAVLAIIEQGYGPQNSAQRVYFSPADEAVIFVKLSNGMNALFANLSNLAARRADGSISSDDELKTKWLRMKK
Ga0210395_10000001234	F015366	GGA	MTPEKKRRVATAVGFVSGVLTCLDGMRDAKIVWPPDAVWGALRGPQRLELGAGIALMVVTLAISALGRRANP
Ga0210395_10000001280	F000260	GGAGG	MNWKSRFAVGVLTALAMMLLTYFLPRGNAMRDAAVVQFPLTVGIWAIFVLLFVKLK
Ga0210395_10000001416	F013218	N/A	MSEKKGLLSSGWGMVTRNKRYIFWFWLLNLTLAEFGTAAFRKSAHAILDHSMAADRLLHGFDLAVMIGLFARPEFGSMAAMSTVAGYFAFLFLLFTALFLPGIFQGYASTYRLPREDFFRACGRNLWRFIRLMIVAGIVMGIFTGMLFGINGFLVKKAGESTNEVLPFEVQMTGLAVIFLIMTTLRIWFDLAEADIVLNDQHAVRKSIGAGFRHTFRGLGRLLTSYVAATILAAIILVGGLWIWMKMVAPDHWFGAFIVSQLILLMLLVPRFWQRGIAVSYWQQHMLVPVVAVKPVIFESAPVAAAVPAGPPSAAPEGA
Ga0210395_10000001443	F008017	GGAGG	VKAEAATQTSVSQALTKGACPICGILKDFQWTLAAIVRPQAALRLCNFHTWALARSRGGSLERSTPGESVSSVFLEMLSGSPAGKVSSDDCALCHRVREEEVTRLRELAQQFQRPMFVQWMKTQGSLCLDHAGKLKEFVPLRLRTLIDEVVERNRSELREELEAFHEQLKHGVHVGGGLLGRVAEFLVGQRGL
Ga0210395_1000000167	F000867	N/A	VLLLIHVGTAALGCPPEPALSMSKGAARWFSGTARLMRKKSTLSLFAVLFLLSCSPRDFLTRRLAADLISTSDAFKTPQQFVLQTGVVSNKEYVSPEYLVLQRHGWISASTAPCSPGLAPPPCWDVLLTPAGVETVRALIPAEAATKTSLAIPVAKRELVNVTGISKQGNVAAVDFTWRWVSLNEIGAALYSGDLLYSATVGFRDYDDGWRVVVAQSSPRPGLTLDEALKNPEPAQ