Scaffold Ga0210399_10470504

Overview

Basic Information

• Taxon OID: 3300020581
• Scaffold ID: Ga0210399_10470504
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1046
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F016609	Metagenome / Metatranscriptome	246	Y
F027041	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_104705041	F001356	AGG	MPRTKAAPPTDLRYRQVPVDALNKGRRGKHHDLVVGILKELEALSPGSAMEIPLADVGGIGLANLRSAVHRASTSRGLEIETLADEKNFYVWRKKQAE
Ga0210399_104705042	F016609	AGGAGG	MPETYKWHAVYEAALLETDWSKIEERITAAEAALHARKHEFDLNHGGEPEENLAIEGALRGLRVLRDDAAKWREKQAS
Ga0210399_104705043	F027041	GAGG	MYRLPRKYYQIYRVDHRRNQEQMVAEVEGLHEAEKLVENYLRNMSASERKDEISYYRSTLSSGVPKMFGLSR