Scaffold Ga0210399_10037889

Overview

Basic Information

• Taxon OID: 3300020581
• Scaffold ID: Ga0210399_10037889
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3857
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F005386	Metagenome / Metatranscriptome	402	Y
F053586	Metagenome / Metatranscriptome	141	Y
F079922	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_100378892	F000313	N/A	MKITEQWLLYKYVGLEFTPLSKPFKTREQAEKARLKLPELERRRVGVGVVRTKG
Ga0210399_100378893	F005386	AGGGGG	MKSGYLEQLKSDIAARFERDLGKPRAKAAVKPTIEQDTALEQQKQDHFARLLMAEAVRQI
Ga0210399_100378894	F079922	N/A	MAKIFYCGGLSGRLGTLRAVIPVADLSGVLSQESPKYVGKSFPKIKQTGPSCTVIEVVADEKHGQWRVGFYRAAKGPIEFEDHLRAF
Ga0210399_100378895	F053586	N/A	MERIYDILQRIQSLWKELELKKPDSSEYVALLNEIRVLSDEYKALIDLPKKPRELR