Scaffold Ga0210399_10035530

Overview

Basic Information

• Taxon OID: 3300020581
• Scaffold ID: Ga0210399_10035530
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3990
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000863	Metagenome / Metatranscriptome	856	Y
F013658	Metagenome / Metatranscriptome	269	Y
F050696	Metagenome / Metatranscriptome	145	Y
F084563	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_100355301	F000863	N/A	MRAADHGYRLPEEGPLPDLALYERLISYGIAAADARDGPVDHVTARRLGIWLAARPQSPAFAQALVRFAETGTVTHALKTQLRIHARSATHADRPQAARLLHYCIARGTELGPVGENFAAACDQIDRADTLL
Ga0210399_100355304	F050696	N/A	MCADCPDQSCPTCQTRLRDAQAYDQMADRMLQAAEAALGIHHGHTQRPGPPRQASLAADKEAGQ
Ga0210399_100355305	F013658	N/A	MATERHGSLANVPLDAVAGLSAELAPRVGLHPGAARAALRKAVLAAKNAGLR
Ga0210399_100355307	F084563	AGG	MTFAITLTAVAVFLSAAAIVILAILVAAIRSDDRAKNLTRAPRTRAEQVTRRLLGVGVRTDDAGTPSCPAFPESDLP