Scaffold Ga0210399_10003270

Overview

Basic Information

• Taxon OID: 3300020581
• Scaffold ID: Ga0210399_10003270
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12623
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004288	Metagenome / Metatranscriptome	445	Y
F032054	Metagenome / Metatranscriptome	181	Y
F049791	Metagenome / Metatranscriptome	146	Y
F091755	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_1000327012	F004288	AGGCGG	MNDDVQRGRHDEKLFRNERRLPTLIPVYLASLHDPRNREQTTTENISPHGARVISNRSWRPGEGSIITQTVGGFAQAGRVIYCVPTDGYRFCLGIEFPDRAVKWAELSSA
Ga0210399_1000327013	F032054	GGGGG	MSTLLDILKKDSKGTFHWLETANDIETAITRVLQLSSGSQDEFVVFREADLQVVATSRAIQTENETLRELTEA
Ga0210399_1000327014	F091755	AGGAG	MPTERIQKRSPATVALQISSAKQPLITELAFTENLSLHGVRLVTGRVCGSQGSA
Ga0210399_100032707	F049791	AGGAGG	MAQPQTQRSYIPMTISCGRCQQEQVVHMRARTGCWQMAHQSVKCLTCGQYFDVMIPDAIIAGPFPSP