Scaffold Ga0210399

Basic Information
Taxon OID	3300020581 Open in IMG/M
Scaffold ID	Ga0210399_10002176 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020581 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15284
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15284

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (82.61%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022248	Metagenome / Metatranscriptome	215	Y
F026812	Metagenome / Metatranscriptome	196	Y
F050161	Metagenome / Metatranscriptome	145	Y
F056112	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_1000217617	F022248	GGAG	METMLGVAGVVVITMLALFSALALQSALLHLTIRLMQPATADRRPARVAVAHGTRMVARAFQMQR
Ga0210399_1000217621	F026812	GAG	MAAAFVLWTMVSGAGIARAEGPSCADLRAQKEKVYGFHLTQLNETQIDSKSKEIDAYWKQVQGAGPEGVGCLKEMLALEKTDHIFQFDAASFLFQLDKSPESLNLVKDAIVQTDFQETDPANYLSLALELGQRGVNIQSLAARLLLFPNAIIHISEHSLDLDSDTAALFLYGSMDSAKASKALIAQLQAQEPFVRAAAAHLLAEEMTEDAFRTLSAWGGLAEIKEDYRRNDIQSVMKYHPPDPAEFANPKWTREQVLQIIAGLPHTRKEFDDVMSTRGAEFDRQMREKKPSQEELAKAVAESEPIYGIAERTAFQNAAVVALKAEDFDTLREARRKSLYNISDESLSEYLAYTQVMIRLLNRLDLYKDYRAH
Ga0210399_1000217622	F050161	GGAG	VQSFGETCRKIFSKILLFPWALLSIALLAAICCVSRPVAADGDAALREATQRFAERVASIPGLHGALRLEWRPDATWSEGEGERWLELIRDQFERRALNLTGDASAPALDVFAAETPTQVVLTAKTRVSDRDEVRIVSIARALLPPGALPVAPVRLERQMIYGSPDRILDASLLENSAEGGLVLLLYKNYELVALRLDATGVVKQSVSLNAANLKPSRDPHAEITVRETVVSVELPAKACDFSWESPADLKCRAEKPAWRVETRLTSPCDGREWKLFSSGSEPNSKDLLQVVPDGALRESSAAVLSEFPGPIVGTSGEHDPGSALVIARNLRTGNYEIYKITLACGK
Ga0210399_100021764	F056112	GGAGG	MNESKQRVVKFLEKEIKTYAALSLFLSKKSTLESFNARDRQALMHPAFYKERMKEAKKLVIELKKSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210399_10002176

Overview

Ecosystem & Geography

Associated Families

Sequences