Scaffold Ga0210399_10000970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210399_10000970

Scaffold Ga0210399_10000970

Overview

Basic Information
Taxon OID	3300020581 Open in IMG/M
Scaffold ID	Ga0210399_10000970 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22473
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001189	Metagenome / Metatranscriptome	753	Y
F006637	Metagenome / Metatranscriptome	368	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_1000097016	F001189	N/A	MQYHRNVDKLLLYVFGPLAFAAALLVIATGIRQAITRFRSRPTPDQTKAAYQAYLHRLLNPQLVVVERELGKLLPERLLQLYEDKSAVQAAGFQLEKPGQQGWWPKRWQVYCFEPLDLESLNELPYEEELGPGFCFATTGRGSWYWVAASEARAKDSPVIYLDYDGGGSHGETVANSLDEFLNLPRLPLK
Ga0210399_100009704	F006637	GGAGG	MAKCPACDHDVRPPFFLNIDAWRHLLCPHCKARLEMKPPRSFALAPLMAPLFVLARQGRVLEVVAFVYMFATIFLLLLESVRPEVQLRKKLLPEPTIRLNIDGPSD

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