NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10000041

Scaffold Ga0210399_10000041


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10000041 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87580
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F000469Metagenome / Metatranscriptome1102Y
F000986Metagenome / Metatranscriptome813Y
F003039Metagenome / Metatranscriptome511Y
F003144Metagenome / Metatranscriptome505Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_1000004112F000986AGGAGGMVLLAKAALGLGGTLVLAGAYTMREGVIRIDVDEYRSGGSHVHMWVPAAAVPMAMHFVPDKPLQHASEHAREALPILHALVKELKKYPDAEFVEIDDNNQHVRMRTHSGKLQIDVDAPGEKVHVLCPLSTIEDVTVQLQERGPRA
Ga0210399_1000004117F000092GAGGLIDGKVEVTPKEDGQIDPLQLLKATYDSGVTAAEMEMTARGKIVKDSSGSLALQVAPNRSFAFTPNELSKGIEDLADTQTMVTVRGRLYKKPAGKKKADPSAPLKLLILEVQKKE
Ga0210399_1000004130F000469N/AMARDRRPQLSDLDGEFPMGHARMGLTVARYVATVAVVFFLTTPGHAQTVNLSGRYQCAQAKVRGKVIPCTAAPLILKNDGRFELRGWEGSYLVNGEWVELSDSLIKTRAKIQPGHKIVLRYYGKHGLVEMTYERRVAEMGNTALS
Ga0210399_1000004171F003144AGGAGMAWLKRVFYVPAQESSIGLVLILCVVSMSCMSIALVWQAQIIANQREAIQWLQQFKFGS
Ga0210399_1000004178F003039GGAGMKTQELKYVTRRRAAILLGLSETELSRISSESGFGHKEVAGEQEETYFTYEELRQICMLAVHQVH
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