Scaffold Ga0210399_10000029

Overview

Basic Information

• Taxon OID: 3300020581
• Scaffold ID: Ga0210399_10000029
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101311
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (88.04%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001095	Metagenome / Metatranscriptome	780	Y
F001684	Metagenome / Metatranscriptome	652	Y
F002424	Metagenome	560	Y
F019805	Metagenome / Metatranscriptome	227	Y
F050256	Metagenome	145	N
F067567	Metagenome / Metatranscriptome	125	N
F098739	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_1000002915	F001095	GAGG	MKKRKKVLDKGTEARRAARNSGIAPAVTRVIPDKRKRPAKHKKQLIAAELE
Ga0210399_1000002918	F002424	GGA	MRRYSISVTLAVLCSFLGTLWSPAQDAKQTPSQESLPWYNPKRYNPLKLLRRGPKSANDQLAANGNLEARLTHQLQVQGTLPPGKDLQNACSDFKDLADCVASLRVSHTLQINFSCLKWDVTGVKPKPVADSCAGPAGGKAMSLYRSIDLLKPDSDAKSEANNALRRARENIKDASE
Ga0210399_1000002925	F019805	AGGA	MRMGKPSGHGACIPRCKLPVPAELDSVGLCVHHFTWSVEEACAEMHRQVALRMATVERRAEIASYVSECALLLARVTGNLCLSDDLKKRILCTFQSLMNLRENLERVPSGYGLDIRLPRPGLFPPPAPVPSWLHSKSNASLRSQA
Ga0210399_1000002944	F001684	GGGGG	MANNSDSAISRREFARCAAFVSAAATLTPSNLLSAESVAAPLPAQQPANAPKLSPEGQVEVEARIQSIFAQYGSRLSEAQKSDIRRLVTEAQPPLDRLRAFTMENGDGPGLYLKPLMEREKKPSPMPAKPKPSSAPRNS
Ga0210399_1000002947	F067567	GGAG	MWIVLICLALGFAIFALRILFALKTAHADAPPGQKTSREGKPIPANAGGPLSGPDARGGTGSEVAVSPAERKREKVETKELWVDSRYCWVVLCKNHWFHIPKNIFFRHRIPLSETDPVATCPSLVGRFRVRCDDCHKEYFYKPSEVLKYEMELPDSFTPHPLFRDC
Ga0210399_1000002952	F050256	GGAG	MRLAAPVKPSSAKTEQIILFRVSGQLFAVSSASVQEVRSADSMSGAAIEISAPGIRKVRHVVRRGDRSLFIVNGAMHFGLHPAEGALLFVLRKTRTALLIDGIDKMTAMTRLQALPLSFCHEERQWYRGLTALDQAVVPVVKPEGFLSPEELALLDAALLQADNSAAPALEETPLAP
Ga0210399_100000299	F098739	GGAGG	MKKWLAVLGLAGAAWMTFVLYLGSQRLAIISNYPGFFLARWCVHYGGLAPSLWTLWMFNGLLVLTSSLEWIIVGIVARVIARRFSK