NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10707007

Scaffold Ga0210403_10707007


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10707007 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)807
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000313Metagenome / Metatranscriptome1323Y
F080565Metagenome / Metatranscriptome115Y
F105939Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_107070071F105939N/AGKRQRVNDFVADNLEAEADMMPPWTKFQAGIWRDVAKDLRASESTKMVRVWEEPEPKSGAASMR
Ga0210403_107070072F000313N/AMSKIVERWLLFEYVGLEFTPLSKPFKTKGQAEKAREKYPERLRKKVGLGVIRIKR
Ga0210403_107070073F080565GAGGVPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEGERICVRWDDGGLELLFSP

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