NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10129407

Scaffold Ga0210403_10129407


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10129407 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2058
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F001367Metagenome / Metatranscriptome713Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_101294072F006480N/AMRRVFLGGLALLFCGVIAAREKPEPLVFVFVRVDREKDLALLRPMIAPDIGVQLDSGPRSLEQGTVLRCTSFVREHSAIVEGQLAQVTDLLLDCGDRKFVVKTLDFTPERK
Ga0210403_101294073F000512N/AMIRVLRETHEAPENAAHRLKMAGGINRLGEPNYRAVWGWNRLAWIGGKFEEHDSATGSLLREVVELRQEPKYPAVNRWHIERWVAPEVYGSPRLWYAQTIERENGVSIPALGPYPSRGEYEHCFTLETPRGDFLQLTPTMAEHIARAIEFSRHLTRSKKRRSIDDRERREERDYDAWAYDKLDDAVPAFHKQPFVTVA
Ga0210403_101294074F000739GGTGGMKRLELKQLEVWIKGIVAAAISGGAGGVLTGLAAVGIDPQHFNLQTGLGATLRIATTAALINAVIGVAAYLQKSPLPNDE
Ga0210403_101294076F001367GAGGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPMKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFIGATQDTQIRLR
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