Scaffold Ga0210403

Basic Information
Taxon OID	3300020580 Open in IMG/M
Scaffold ID	Ga0210403_10039105 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020580 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3792
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3792

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y
F007128	Metagenome / Metatranscriptome	357	Y
F009917	Metagenome	311	Y
F084509	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_100391051	F007128	N/A	SDDGAAISSYYTTHFFPERAVESSLGLGAHRKLFSYLTMYVEGAGNLALTSFVDSESAATAQQPLGMSSPGLKDLELPINVLGERVAFQVGTNQAGAWFKVQRFAPSVRVDPWAPVRGMN
Ga0210403_100391052	F084509	GAGG	MPSYANVLPPVSVGFGDSAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSAAPGTISLQFQTADTDIDAAYSQEGALISNVNTGNVTRAEFPDVVAKFARILIATLTNNVTATAKISS
Ga0210403_100391053	F000781	GGA	MLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPATPSPAPPEIAALKVQAANGWFDLAIMDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQFVGSLASAPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
Ga0210403_100391056	F002853	GAG	LNLYTGGIMGRGAQGQTQSLTDNQLNQTNALNQQLLGQQQSVGNLVVPQFQSILNNPGFSVADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSDLTDQLARQKGIAEGNLAQQNQLNFSNTAFQRQMAGLQGLSGLFGVDSNLLWRTLGIPAELLNVRANASRNNGGFFSTLGSSLGGTLGGVPGLFL
Ga0210403_100391057	F009917	AGGA	MGTSGWTYLVVVFSVGAQLVVFLRWMHRRMRDDEIQRVFVRALAVRHLPNIYRALNIIAERQGIKLEEMPSVNYVDLRNGERHHR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210403_10039105

Overview

Ecosystem & Geography

Associated Families

Sequences