Scaffold Ga0210403

Basic Information
Taxon OID	3300020580 Open in IMG/M
Scaffold ID	Ga0210403_10030428 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020580 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4313
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4313

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013999	Metagenome / Metatranscriptome	266	Y
F025001	Metagenome / Metatranscriptome	203	Y
F066643	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_100304283	F066643	AGGAG	MNKENNCTCVVCQVEQSLLDSLSTQTARTHFQALARNYPILSHFDSPADVIAQLHEHEDVEIVNHIAWNAILHALVGSIADGVAEETGQQLLLLAYAPAIHKVYREVCQKFPGLCHDDVAQQAALCFLETARSPEIQSLNGHLPAALARRFRQSLFRWAIGELRQSRPLQEIPPDIPELQASNFEEGVVLEHFLSKAQRLGVLSASECELVRKFHCEGFQPEELRQGASGPTAIALYRRIQRAVHRLRRIGVPSSHNANKTQCSHQINPTEPKNIFRNAVEFSGEMCTRKNEKGFSPELPNVVTQLEPDIMHSSA
Ga0210403_100304284	F013999	AGGAG	MFRIISSERRIAARRSARSVAVVVVALLLGSPAFAQVGGDRVTSFLSNSLSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSMLQLLRTFAG
Ga0210403_100304286	F025001	GAGG	MIEASTIHLVAALVGALAVLTLALAVFLPQIEAHSRRGSNTANQRTLSSLAARIPISEIRDDLIVRRDGSFCAGWECAGISTQFADAERLEALCSSLDAFIKGIRHPEVELQFRYVIDSETPQVLEERKAQNNSINSPAAWLEENRVSFWRSAIDSRQLRSVRLLAFLSWKPTHAWEARSAGSRFAAALWQGLAQHGSGNLPTIFRNALNEARTKALVQRNREEHSRLVAEFNRILETYRIGLEAVMRMRRLSERELVELIYCALNPT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210403_10030428

Overview

Ecosystem & Geography

Associated Families

Sequences