Scaffold Ga0210403_10003725

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10003725
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13309
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000885	Metagenome / Metatranscriptome	849	Y
F001619	Metagenome / Metatranscriptome	662	Y
F006125	Metagenome / Metatranscriptome	381	Y
F006480	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_1000372510	F006480	N/A	MRRVLLAASALLFSGAIAAREKADSLVFVFVRVDRVKDIAILRPMIAPDIGVQLDSGPRSMEQGKVLNCASFVREHGAIVDGQLAQVTDLLLDCGDQKFVVKTLDFSPKRK
Ga0210403_1000372513	F000739	N/A	MNLIGTEIWLKGVLAAAISGGAGGVLTGFAAVGIDPQHFNLQTGIGATLRIAAAAALINAVIGVAAYLQKSPLPSD
Ga0210403_1000372515	F000696	GGA	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGLYFLGATQDTQIRLRYVKAYPDFTDATSPVLIRNAQEAIAYATAALAGWARGSPLAEKWDEAAADAIEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0210403_1000372517	F006125	GGAG	MPITITLLPSNEDGSGSNLFYAIGSLTFSGNYPTGGDTMDFTTVADKLPSTQIIQVFADSQNGNSGYYVPVQGSALNNWKLKAFTGGGTELSAGAYPGSVTGDIVQVTITARKLQ
Ga0210403_100037252	F000885	GGAG	MATTAPSASNSHLEFIGMIVEIAGVASAVAGVVLSLHHWPAAVALIGGGVAYVIGKKLRA
Ga0210403_100037254	F001619	N/A	MLDWLRKLIQIKYVGLLESDVARLRAENRALMNSLLGTAGYPPVEFPEAPKPQALPRLRKRSWHQMQAWRETDAARDAADDFGGRNDARTNGPVPHS