Scaffold Ga0210403_10003038

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10003038
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14887
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F001619	Metagenome / Metatranscriptome	662	Y
F035232	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_1000303816	F001619	N/A	MDAMKNFLQRLLRGGYVGLLEADVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQSLPRLRKRSWHQIQAWRESGATRDAADDAELVGARRANGPVPHS
Ga0210403_1000303819	F035232	N/A	DSARYGLVSGGRIAGVGAAFAPSRAGQPPPLKPPGSGAHFVTGMPLAEQIARQVSATDPTSQAIHYQRLEAEARKQFRPKKFTRRH
Ga0210403_100030384	F000696	GAGG	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTETDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDVTQHGGLPSRVQDVTLSVWEWRADGIYFIGATQDTQIRLRYSKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF
Ga0210403_100030385	F000739	AGGA	VKRFEIWLKGLLAAAISGGAGGVLTGFAAVGIDPQHFNLQTGMGATLHIAAAAALINAVIGVAAYLQKSPLPND
Ga0210403_100030387	F000512	N/A	MIQVLRETHETPENVARRLEYAGGINRFGEPNYRAVWGWNRLAWIGGKFEEHDPGTGSLLREVVELRQEPKYPAVNRWHIERWVGPEAYGSPRTWYAQTIERENGVSIPALGPYPSRGEYEHCFTLEGPSGEFLQLTPTAAEHIARAIEFSRHLTCSKKRRSIDDRERREDRAYDAWAYDKLDDAVPAFHKQPFVTVA