Scaffold Ga0210403

Basic Information
Taxon OID	3300020580 Open in IMG/M
Scaffold ID	Ga0210403_10001059 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020580 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26841
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (80.65%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

26841

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (80.65%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022248	Metagenome / Metatranscriptome	215	Y
F025326	Metagenome / Metatranscriptome	202	Y
F026812	Metagenome / Metatranscriptome	196	Y
F050161	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_1000105910	F025326	GGAGG	MSLTSQQKRGLFWALGILIMLTLSSVAWVQINTALAHCFSLF
Ga0210403_1000105918	F050161	GGAG	VQSFGKNQCKVIWAQAFLTRVLLPLVVWTGICCSLRPVLADGDIALRETAQKLAERVATIPGLHGTLRLEWHPDANWSEGESARWQVVLKGEFEKRTLNLTQDAEAPALEIFAAETPTQVVLTAKTRISERDEVRIVAVTRSLLPSGLLPVSPVRLERQMIYESVDRILDASSLGSSENDGLTILLYRNFEIVALRVDLKGAVKESVSLNPANLKPSRDPRAELTMRGSSVSVQLPAKVCEFSWEAPGEIKCHVEKPSSPDKSGWRGQTLLTSPCDGSSWKLQYSGGDPNAREVLQVVPDGTTRETSAAVLSEFPGPIVGTNGERNPSSALVIARNLRTGNYEIYKITLACGN
Ga0210403_1000105919	F026812	GGA	MAAAFVLWGMATGAGLAQAQAPSCADLRAQKEKVYGFHLTQLNEAQIDAKSKEIDAYWKQLQSAGPEGVSCLKDMLSAEKTDHIFQFDAASFLFQLDKSPESLSLVKDAIVQTDFQETDPANYLSLALELGQRGASIQSLAARLLLFPNAVIHISEHSLDLDSDTAALFLYGSMDSTKASKALIGQLQAQEPFVRAAAAHLLAEEMTEEALRTLSSWGGLADIKEDYRRNDIQSVMNYQAPNPAEFANPKWTREQVLQIIAGLPHTRKEFDDVMSTRGAEFDRQMREKKPSQGELARAVAESEPIYGITDRTAFQNSAVATLKAEDFDTLREARRKALYNISDESLSEYLAYTQVMIRLMNRLDLYKDYRAH
Ga0210403_1000105922	F022248	GGAG	METMLGFAGVVVITMLALFAALALQSALLHLTLRLMQPATADRRPVRLSVAHGTRMVARALQLQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210403_10001059

Overview

Ecosystem & Geography

Associated Families

Sequences