Scaffold Ga0210403

Basic Information
Taxon OID	3300020580 Open in IMG/M
Scaffold ID	Ga0210403_10000786 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020580 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31705
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (79.17%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

31705

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (79.17%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000781	Metagenome / Metatranscriptome	895	Y
F006229	Metagenome / Metatranscriptome	378	Y
F007488	Metagenome / Metatranscriptome	350	Y
F084509	Metagenome	112	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_100007862	F006229	GGAG	MNKQSDVVSLVNISTQKWPPRHRTYFGSLTIQSPEAGAAYAVTPVRACTSLMDLGDKRTMEIRLSAQEIAEDLVREINGDSGEGSYHGVFVAVGPEPTKEELAEARKKLEAFQTRLVETADLEWERSHNMMFITDLERRAARELGLGKPWLYDPKPMADCPACGEKIRPGVAVCRTCGAILDREKAAKFGLAEREEKSGEAVKATEKKAQTQNKKGGEERRP
Ga0210403_100007864	F084509	GAGG	MPSYGNVLPPVSVGFGDSAAVIASADVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSGAPGAISVQLQTADTDIDAAYIQEGAAITNVNSTNVTRAEFPDVVAKFARVLIATLPNNVTATAKISS
Ga0210403_100007866	F000781	AGG	MLTVAQLAPLKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALKVQAANGWFDLAITDPAVMRPGLFYFVESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQFVGSLASAPVTFGSPATAVVGGGTAGPAPLPSNGSGALPNGLLRGGNGFGVVPGARVVKQTAL
Ga0210403_100007867	F106044	AGGAG	MPNLTYNATWDFNPGDTVTLNAAFTFDLQDPNDNQTVSGVLTTLQGRTPHVALTQTDNATISVVVTI
Ga0210403_100007868	F007488	N/A	MKIRAYEESDLEALREIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPRDKWQCLLGLHEATRRDALARGLEDVHAWLPPAIAQKFGKRLMRLGWVRDDEWTPYCKKLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210403_10000786

Overview

Ecosystem & Geography

Associated Families

Sequences