NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000552

Scaffold Ga0210403_10000552


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000552 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38628
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (83.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F003526Metagenome / Metatranscriptome481Y
F004193Metagenome / Metatranscriptome449Y
F066961Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000055237F004193N/AVSKRRASLVINLDRQPKRLPCLVLDSSKEGFRLRGSLDLRRGQVVELILDEETPSPERCSVVWVGKAGSKQEGEAGLETI
Ga0210403_100005524F066961GGAGGMETVPSSFAHVLLFACPKCGVPLAAACASTDKNLEAADAHWFNPHCPCGWTGSVIGVEATKHWVEAWNIPVSLGPNAEGSCDREPSN
Ga0210403_1000055240F003526GGAGMKSKLLLSVTALFAMFLVPAAGFAQDKSADYRTLTGCLSKAEGDHEYKLTTRNGSTWELHSDTVKLSPHAGHTVTVTGKVRNADMHGAKEDVKDEMKEHGVDKDATEHGHLNVTKVSMVSDSCKK
Ga0210403_100005525F000262AGGVKQFILIRSITLLALLCAACNGTDYGVLQPNPEDLCKCLPIEPDIADFRHSEKHVPIPNIAAQEIGVDTILSWTQDEFVAPDAPRTGRELQVFHVANAFLQVASVNAADCDVVFEISMTPDKNAPRVIVETPVDNEFCSARQNAQSQLAKHGFKLDSQHGGELPQALPVSVLGMAFEDFEHNRGSAQVATLWELHPAIVTFP
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