NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000271

Scaffold Ga0210403_10000271


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000271 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57587
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (87.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018819Metagenome / Metatranscriptome233Y
F028918Metagenome / Metatranscriptome190Y
F053414Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000027118F053414GGAGGMVALRGVLAMSLAVSLCSYNLPLYAGGKPLGILTLAYGAHLNASEAFAGLSVFDGESLSTDAEGKLSARIGGSVITLVGQSAASLQRSGDGTHIDLDAGAIYIWSTESNPLEVHSEGALLRPHGGHQVQVQVLVFAPKVLQITTRQGGVDFWYGKEFRALPEGQTYRIYLESEDGPGTPPPAGSGTDKAGLSAGTKVAYFILAGVGMGLAAWGIHDLIESHNGVESPAKP
Ga0210403_1000027129F018819AGGTGGMNDFSYLPIKDWYALGSLVAQLGFLIAAVWFARNFLRAMRAFQEQIGALLKLSITSTPGERQSTNANARNVLGEASPYWLAPSISAPAGVPEVVERGPSVFAVGWQRTVHWLREPMGSARVSYRRRVINWLQAPAGH
Ga0210403_1000027151F028918GAGGMHSRPQIRHFSAWLLAFATAFLPAAAQPNPHNRDKNTWNYDGGIFMDTDGELPSGACFRVKGRVTSDDFFENLRREDTNSGTVYRRRNDIVKEFPKTLHLSLSIADTPCDPHMKQTNSRVYLTDEMIHSLRLHFFWKRALELRPVKGIVESGGEVRAVPWYSHGLTKELPKRFEWLVEFDLPGEGVPLTDNLVLMMYTPDHHLVARGAARM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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