Basic Information | |
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Taxon OID | 3300020580 Open in IMG/M |
Scaffold ID | Ga0210403_10000183 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 70123 |
Total Scaffold Genes | 67 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (77.61%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000207 | Metagenome / Metatranscriptome | 1597 | Y |
F048437 | Metagenome / Metatranscriptome | 148 | N |
F087672 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210403_1000018338 | F000207 | GGCGG | MKMILASILTTILIVTMTLGAMFILVQATEYVTSLESPLDRATAMGAELILGVVLLLGTVWLATHLAVRIFSTKEPPPEGGPVV |
Ga0210403_1000018341 | F048437 | GGAG | MPIRAYLPGYSWFRIFRNAAIRIGVYTSVCLALVFTAWLFLANRVPLIERLAVERNLAAAVLLCLCALIPFLRFLSLPGHQLASGLVAWLLFSCYYRLLCVFFRNLSDWHSTFQVFMIGAVVYMIIATLSWITVTIWRTRAAHASHPNHHAS |
Ga0210403_100001838 | F087672 | AGGA | MVKFRYEWFLFDYKKGYPDRISKPFKTKTAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS |
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