Scaffold Ga0210403_10000123

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000123
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88589
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (75.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001456	Metagenome / Metatranscriptome	691	Y
F002013	Metagenome / Metatranscriptome	604	Y
F038103	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_100001232	F002013	AGGA	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFMLEMRKLEEDDESRFEEEFNVWLSDEPLTNDEICQLMRVVERERKLEGKPPLVQFLPRSKRQKKGPKKTEGVHSNRKPNGPMPSAPGVESIVPETAHA
Ga0210403_1000012328	F001456	N/A	MTTAPSPANSESQRSATSLREVLIGALFAVVLLIPKLLHLRRNPKSWMFFRFFLGLVGASLVIVPVGMGNSFFLSLLGLAMFIGAILLPPAKPKSNTDRKAHELGALVVVNGGRFKLGEAPSFAAQLFVGPDHVSVLDSDFQSYLEIPVSEMTSARAEESHGRWYLRIEWAKETATFLYRGVFAEHLARVAESTLHGVMRPALPVIPQRRAASA
Ga0210403_1000012336	F038103	GGAG	MPERNGAETRRSGRVTLRVPLKIYERGPNNRFLDEEAYAVNVSLWGGLIAFGAALERNQTLFLFNQATGEIAESQVVYLRPMRLAGGLGLVAIKFLKPSPSFWGVVFPTVDPSRSQTRQYANEKGSDAESPKV