NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000099

Scaffold Ga0210403_10000099


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000099 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96256
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (81.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000430Metagenome / Metatranscriptome1149Y
F004487Metagenome / Metatranscriptome436Y
F015638Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_100000995F015638GGAGGMTQSFYDILIEDADGRHLWLECQQDLEIARKRLTILGARYPGTRLILWNHKTRAILAATEGY
Ga0210403_1000009960F000430AGGMNFMIRPRKQNTAPIAEPEAGRPAGSGEEWLGRNRSGKRRLWERLNPRSRKQIRVVAEALALQQTHAQLPEPLRARLSAAIDELERHLARLRALLLEVARRTPRGE
Ga0210403_1000009962F004487AGGAGMSSRSKKDLASSCLFTFSDGRRCRTPRTGNHRHFCFDHAPKEVRARAAETIGKDLAYFFSGDYLSANDLSAALARLIPAVVRGDIKPKTARTVAYLAQTLLQSIPIQRTNPLTPRHRTRLNHHR

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