Scaffold Ga0210403_10000096

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000096
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97598
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (80.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000063	Metagenome / Metatranscriptome	2803	Y
F007329	Metagenome / Metatranscriptome	353	Y
F013872	Metagenome / Metatranscriptome	267	Y
F048493	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_100000962	F048493	N/A	MDANRLLESEQLGKNGLMKIGARVRLIGIPDGLEDYPDLPTKSTFEKCIGREFVIAGFNEVGMAELGIQSVTGSQGEKIWVETKFLELVSK
Ga0210403_1000009666	F000063	GGAG	MLDEGFWAEIKLGDEHLRLFSEHSALGVQASVYDVKTKNWIAPSESVADIEEGKDKAAAYAQTHLKHAANLDLPPLVWKKSRST
Ga0210403_1000009672	F007329	AGGAGG	MKKLSVAVLALSVATLGIPVLTHGKPQDTSQNQDEKKPKLMNIKGTVKADGDKITFVADDGGKSWDVVNPETLKDHVGHHVELSAHVYPDKGQIHVMKVTML
Ga0210403_100000969	F013872	GGAGG	MGKAVKREEKKPYSKPTLTVYGTVRELTQRAGRNGKADGGRSARANRTHV