Scaffold Ga0210403_10000083

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000083
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101990
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (73.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000165	Metagenome / Metatranscriptome	1824	Y
F001032	Metagenome / Metatranscriptome	800	Y
F002535	Metagenome / Metatranscriptome	551	Y
F047786	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_1000008333	F001032	GAG	MGLGGMDTKQRERNCFVDSCSSAPVTSLGQQDLCLNHFLLRCYEKLERLDPRGGRFCSETLDAAAMRAFIEECSRKALDVSLHCKDLSNLERGRLLDILLWAGELFLLLRVPRFTFAASAAPVDSSVAALAAAPRS
Ga0210403_100000834	F000165	GGCGG	MMLTIAKKPPLVEDLRNHSQEQIDELRLLLNAGAPSRPDPRRPGFYEIEGLSNTYYVFKYPTGTKVLLLGVWERESDPVATMVACSCPAA
Ga0210403_1000008365	F047786	GAGG	MNTDFKVGDVVRHKSGSQDTIIIKFEDESVAGVTKKLAVCGRFEGQTFRQETIPVEMLEFVNRWFAAGS
Ga0210403_1000008391	F002535	AGAAGG	VDKEELERLLRTIKNAETAELFMLAQYGHRRISSQVMADVDRERGWTYRNANEFLTTTTGNSREYARPELTIAIA