Scaffold Ga0210403_10000055

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000055
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 125855
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (80.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F000742	Metagenome / Metatranscriptome	912	Y
F004487	Metagenome / Metatranscriptome	436	Y
F011404	Metagenome / Metatranscriptome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_10000055113	F004487	AGGA	MFITFSDGRRCRTPRTGNHPHFCFDHAQKEARARTAETLGKDLAYFFSGDYLSANDLSAALARLIPAVVSGNIKPKTARTVAYLAQTLLQSIRLAQHEYIKRLRHQ
Ga0210403_1000005521	F011404	N/A	MLGKTQRIRILALLLGMVFLGAQFHFCADLTATPSASHICPICSTVGSAVATQSPSIAVVPFVNRLELPPLLVSPGSAVPRATSPRAPPAL
Ga0210403_1000005522	F000742	AGGA	VRRALALLACAALLYFAAGGSFLHEHTKGPDTACHICQALHMPTLAAAPLDLVSTPEFVTWYFSLPQHAAPSDSFALHRAGRAPPSA
Ga0210403_1000005533	F000043	GGA	VFYQLGWTTLPGLRGLACSEFHATPTSSPDNEGGVAIEFAGETERDMFLEQLEEYFAARRFTNTADAFDRVKAFVLEQKAKK