NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000051

Scaffold Ga0210403_10000051


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000051 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)128410
Total Scaffold Genes118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (72.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000408Metagenome / Metatranscriptome1172Y
F007082Metagenome / Metatranscriptome358Y
F024598Metagenome / Metatranscriptome205Y
F026094Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_100000514F000408GAGGMVPLSTSVASQRAERRISVRLPLRVSGRDKRGVVFEEETSSENLCRSGAAFVTRFDVAIGSDLEIRIPFSQYASRRGESDFTTQGRVVHVRDSQWDGEKLIGVQFTGPRFQRVFRSESAA
Ga0210403_1000005167F026094N/AMNRKMLKTYGILKGYNVQDETYEWALRANIVIDKQGVIQLIDEGDSAVDPNTALTMCTTLHKKDAAK
Ga0210403_1000005192F024598AGGMRKVYYNLMPKLSISIPVFALSLLAAMPGTTQQPDSLKTASLQSHEAMTISAVPWMDPALYKAKFPKKSPFTAGILAVMVVFRNDSDQSVKLGLDRIRLSLQLDEENRQQIAPLTADQVAYGTLAPTRKDPTSKRKTFPFPTGPPKTTPDKNWFEIQKQAENAGVPTNVVAPHSTVQGLLYFDLQGQFDLLSTAHLYVPDLMVMEKNRSLTFFEIDLSRPGGN
Ga0210403_1000005198F007082N/AMNRGTRYSFSLRLSSRLVGLFLVLALAGCSTSSHTSDPHLRQIDEMLNTQLPQGTPKSRVIFFLNTQAFPLENSGDAKVLVAVVHHVDTNTLQPATARVTFHFDAAGKLTTYELAPASDAPPQP
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