Scaffold Ga0210403

Basic Information
Taxon OID	3300020580 Open in IMG/M
Scaffold ID	Ga0210403_10000025 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020580 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	169800
Total Scaffold Genes	149 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	124 (83.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

169800

Total Scaffold Genes

149 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

124 (83.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F000653	Metagenome / Metatranscriptome	959	Y
F000742	Metagenome / Metatranscriptome	912	Y
F025538	Metagenome / Metatranscriptome	201	Y
F079143	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_10000025130	F079143	N/A	MARYSAFLGRRVEVQYRAGDILLPASGTFVADSGRSIFLEQSIEQRGQHKHFRWEIPYQYLVRIEEKPDSGATANSGSTPATSKSVPEVSPAPEPSDEPRSAAAKASAGGAPGILPLTHRPKTA
Ga0210403_10000025133	F000653	GAGG	VVEQKQLTKGKAALLLILSALGAIASATWLHGWQMYVGFAVVGIGIFIGFTLWNRKH
Ga0210403_10000025141	F025538	GGAG	MAQCGVTEAKMGSHRGVLVQAGFLLTSALNASNVCADEPKPVPENTIHVQLAAPVPPQKFPKAPKFFVSEVIDRSGNPQPMLVLRAKGGVFLDRQPTQITREAVEQSLKAADLLAADAASADLVLQIYVFHFGLAQGSGLDYFGKVEFSVMVKNLKTEESQQIQAAGTCIANAAVRKKNIQKNVQANIEGALEDAVRNLVRGTQLREAVAVLLKENASAPVASPGNGAA
Ga0210403_1000002529	F000043	N/A	MLFQLGWTTLPGLRGLSVGEFRATPTSTPDIERGVVVEFRSDSKREAFLRDVEAAFAARRFTNSADAFDTVKAYVLEHAAKQ
Ga0210403_1000002540	F000742	AGG	MPSGGTIFGRTAVHRTLAVLACAALLYFAAGGSFLHEHTNTNGPDTACHICQALHMPALVAAHLDLVSAPQVITRYSSLRRHVAPSDSFSLHRAGRAPPTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210403_10000025

Overview

Ecosystem & Geography

Associated Families

Sequences