Scaffold Ga0210403_10000018

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000018
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 194440
• Total Scaffold Genes: 169
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 131 (77.51%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000168	Metagenome / Metatranscriptome	1799	Y
F038884	Metagenome	165	N
F052766	Metagenome / Metatranscriptome	142	Y
F087682	Metagenome	110	Y
F104827	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_100000181	F038884	GAGG	VPLLRKLICVSSLWLPILSAQSVRSPDAKVQLPRVSEFEQKTDGLVERFSTSGRTLVDSVIELAYKYKVPMAIEYADRQATTRPLNLEFHNKSFRGIVEAIVKEDPQYRVSFSNGIVDIFSPMAREDSSNLLNKIMKDFSVTEMETRLADSRLFCAVVQAAGSGGCGGSLAVGQWDPLRITLHMHNARVYEILNAIVAQNGRAIWTVTASNLASLPECCGLWYIYPLEEPFKSVVSDRLVRMPR
Ga0210403_10000018124	F000168	N/A	MAREKQKPKDEAAELGQRIAETLLSERIVPRFVDSYVIENGRHAIQVHASLYRDLLTLLQREALLALTVRALEIVCNEPRGEGKSKPRTMLRRDAVVFRRKFLASLGRQQGWTAGDALDFQRDLQMYEELLARANSTRRSRKPFEAANHPFVDRCAFLLDSSFMEKARLAASRALTGIEELAVQIIAPQPQQPAKPRAREQL
Ga0210403_10000018134	F052766	AGAAGG	VPFLVRSCLALFISALLVSPLSLAFDTPLSDQAVREAYFLGQRRDESTAEFLDKYRRHLPLPESGPWISTVEFFTPFAEAVELSRQRSFGYSAQDAAQDYRNNGDRLRVTITIEFTDSYGEVSQVKSSQRSGSPNGFSVRPSNFWKDFTYRLFDGDEVVEPLEMHGNPTFRTVDNSTVMTGAQIVLIYDAGKLSSSSDAAIVVDFPDYPQLVAPFDLTTLR
Ga0210403_100000184	F104827	GAG	MTAIASAFTSEGFVIGADGRQLGKDNKIFTESAQKIFNFSYRHVDVAYAWCGEASAINESNEVLYDLYAITRVALNSAVQVARRQFPSFIQQSCEGIYEGIIKSPIVGQITNSDSTPESRARMLLNGYFDEQPFMVEFHVRETDRIRVQAERVLRPIPLPTRNLFSGCVRQNKKYENILPATTREALKLVSDYIQECIDNSDPDCSGVGGHRHIAHLTPDGFYWIDAPKISN
Ga0210403_100000187	F087682	GGAGG	MTAPHNPARAARRIAEAVAQVDPPMCIYCGNTDPRLVRPRRIQNHHFFGEDRDEATVPVCLNCHAGAHDALTDAEVPMACEKDPTKFARAIFRALAVHLELLAKACWRFSKKMEEK