Scaffold Ga0210403_10000006

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000006
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 278090
• Total Scaffold Genes: 271
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 222 (81.92%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000789	Metagenome / Metatranscriptome	891	Y
F001619	Metagenome / Metatranscriptome	662	Y
F001959	Metagenome / Metatranscriptome	611	Y
F003257	Metagenome / Metatranscriptome	497	Y
F004417	Metagenome / Metatranscriptome	439	Y
F004677	Metagenome / Metatranscriptome	428	Y
F006029	Metagenome / Metatranscriptome	383	Y
F013331	Metagenome / Metatranscriptome	272	Y
F017007	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_10000006143	F013331	N/A	VRIREADDLSGITGIGENFLVTGEAGIENNFSAAARNRARRAAVKDAPVFQREDRGSVLNFGQWVLPYFS
Ga0210403_10000006172	F004417	AGTAGG	MQVDTRGLNQEHLGKRMQVELADGESLQIRLHELTVCAKPEPCCGITYVLISTNRLDGKRDPGTAYWTAFGEIEKFEVLGD
Ga0210403_10000006229	F006029	AGGAG	MKKVFLLMLTGLLFTILGCSGNSQNAVSKSAPTVVQASAAPASAPPVVEPAAALPVPSVGHVNQQAWRSENVNDPLGSAVALRRTSLDGKFDLVILQRGTDSFLSFVRHARWESVRHQPAKGKIMDLRVKFEDGQEQRIEWDELGFGTENLYSVLWSYPAKADAPIGPVLEGPKGDSVGGDQLLIQDMMKHKTMLLEVAPGVTTQFDMTGLAHEIEKVRTPKAQPVLEASQIAE
Ga0210403_10000006235	F000789	GGAGG	MAQRSSFAEMKAEQAKMTASWKAEGRLSEAWVVADPEIVEIFSAGATFGMEVGRRGSGEPAYSPDEWRRALREAVEKAAALEDKLEKAREAMQKKEKD
Ga0210403_1000000650	F001959	GGAGG	VKNLNSVFAAYLAGWGIFFVYYISIARRTAALREDVERLKNSLNRGK
Ga0210403_1000000655	F003257	AGGCGG	MQRTRYPERRRTMRLSLQIPLTVQCRLPEGETIDLSASTYIVGANGALLLMDTPLIPGQTVRIFNDHTAKFVDCVVTSLREKRERRFVGVAFINPNIDFWHIVFPKSGTRQAIRSSQTGALMPPGIRQDNPPQF
Ga0210403_1000000659	F000536	N/A	MVELTPQQMQTMERLFAAGFRPIAIPPYESALCMKKGDCAVVLAAVPNGGLKMLAPPSYLVSGNLGVKLKRGSGEVFVWKKKEIDATPERLSELESFRRELSEILELPANQ
Ga0210403_1000000663	F004677	AGGAG	VTRYKTQPPWEFLLSASRNSLQSYELTRLSHAANLRKEINDLLDQWLEENASAMLARWLMEQRARPSETDAAPGEAKSNGGPSVSDNFFTDTAVQPSVTRGAA
Ga0210403_1000000666	F000188	GGAGG	MGVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKYLWRPDFRPRLNEWVADFALAGQAALEGPDWASCMVMFRVYYLGLAAYENARHFLGLSERSWVNWSEEIRYRCGKELLRRGMFLPRRYFVSSS
Ga0210403_1000000676	F001619	AGGTGG	MKDWIERLFRGRYVGLLEADVARLRAENRALTNSLLGTAGFPPLEFPEPPQPQSLPRLRKRSWHQLQAWREIGSNRDATLSSDDREEARANGPVSHS
Ga0210403_1000000679	F017007	N/A	MAALQGLSGLYGIDSNLLGRTLGIPAELLNVRSNASRNNGGFFSALGSGLGSTLGALPGALF
Ga0210403_1000000682	F000624	GAGG	MHPLASGFLSVLVPVLVQFVLFLRWLHRRMRNDEIVGAFVRDIAANHLPHIYTALHEIAERQGITLPETPMVRFVDLNGHRRSR