Scaffold Ga0210403_10000005

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000005
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 289213
• Total Scaffold Genes: 251
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 202 (80.48%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000653	Metagenome / Metatranscriptome	959	Y
F001069	Metagenome / Metatranscriptome	787	Y
F001078	Metagenome / Metatranscriptome	785	Y
F001686	Metagenome / Metatranscriptome	652	Y
F001916	Metagenome / Metatranscriptome	617	Y
F029226	Metagenome	189	N
F030385	Metagenome / Metatranscriptome	185	Y
F045330	Metagenome / Metatranscriptome	153	N
F054652	Metagenome / Metatranscriptome	139	Y
F061228	Metagenome / Metatranscriptome	132	Y
F079143	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_10000005122	F079143	GGAG	LTLLLPPSDTWYSMARYSPFLGRRVEVQYRAGDILLPASGILVADSGRSIFLEQNFEQRGQHKHFRWEIPYQYLVRIEEKPDSGSSVNAGSAPVSSKPALEPSLASKCENEPRSAAATASAGGAPGILPLPHRPKTA
Ga0210403_10000005125	F000653	N/A	VGIARARTEARVVEQKRLTRGKAALLVILSAVGAVVSATKLHGWHVYLGFALVAIGLFIAFIRWNRKY
Ga0210403_10000005208	F045330	GAGG	LEAQQSLDFEELAHRLTAFGLRTFNEFGLGGRNSTVAGVGLSVDDFVSAVLVEYMEGKLQHQASRGDLFSLLATALRNDIIDSLRKAAHAHEESRSSLPAERDADPAPLSLDELPGSTIDFAGSIDEERYGERARTAFAGEPELAEVVRAVLELNLYKPREIAAELGITAAEVQNRKKRLQRQLIDHNLVERKTA
Ga0210403_10000005209	F029226	GAGG	MSEQKEKGLFPQKARLAQLSDSLYGSPSELVAREARELLRRAGIDPEDVKARLYRKFDALAKQYAAAGRPVPALFKQALSDLRPGAPGSPKERALVREARAAIRSVIDHAQRMQERLARLPRVTLATAYRNKKELSERDKKLLDDLAEDLLKHNNRSRPKDGR
Ga0210403_10000005237	F061228	GAG	MYWGSGPQIGLLTCLGYLLLAMGAALVWRNRGDFSVWVHDEISIFRRTFSRYTPVGPFYMLREESRIKAIPTSFVGSLSRLPRSRVNSAAVLFALAFFLFLLDFFV
Ga0210403_1000000536	F001686	AGG	MNEFSTWMQTNWYALGNLLLQASFLTAAIWFARDVLRTMRASQEQIGALLKLSMTGALTERHSTTAAERSFATASPYWLTPQEFPPALLSEPIESGPSRWVVVLHSVTAWLQTPMSTGDAAPWRKAIKWLQAPARS
Ga0210403_1000000539	F001916	AGGAGG	LFSDHLITISGRSFTITSHDMLMMFVSIVTGLLFWTALYFSRKRIVVLKRSTGTDQVTFELSRIADALERIANRPADDAIAAASRRQQQVPPPPQRDSKGISYSMLGR
Ga0210403_1000000545	F030385	AGGAG	MKILARVLLASFLILSQGPLSAAAKDKHPSLPTLVMNAKTIYVENHTTAAELKNTAFTELAKWGRFQVVDSPEKADIVLQLSNGNYVKFVPGGEDSPAAAAKPGKQDWVGADGAVPPGSTRVSLIDPKSGSSLWSDVRKTDSPKAATHMLDGLREAFDQKEKGH
Ga0210403_1000000550	F054652	GAGG	MAKFTQIHWGRVLVGGFLAELLVFAIVFPTRYLFGQRAFLASILMASAVLPFLFAVWVGRRIDSLFVLHGALVGLVAALIYFGLAWGQPQPLLYKIAHGLKIVGGMAGGVVASRRRSAAAVVMRSE
Ga0210403_1000000580	F001069	GAGG	MQYLPGFTVQCINPLCEARGQWMRADITVLTPNNGHCPCCGDFLRNVPPPLAPRFRMRPRSLTARPPLRPRPR
Ga0210403_1000000589	F001078	GGAGG	MLWGLWRHFKKLAVYNSYVPVRIKRLNTLAADLPLQNMPGRVIIRIAALSLSLAASAEAQSVVPDSTAAIAASKPGLFDRVVANQRRNEEAGDMYERVERLEIRKSPSDPAIISVKITRVIPSGTGMYHIVLGPDGQPTDAAVYRHDLENLEKALVLAVGDSRSQREAMEKFAKKKKDRNDLIDSTRTAFLFTFVAREPRADRMLSKYAMEPNPAFKPTSRLSTVFSKVHGFVWIDEDSGELARIEGEVTEDISVGLFLAKVYKGSHFMQERYEFMPGLWLASFSQYDFDGRKFFSSFSIHERTFYSNYRYIGPPKEALEAVRKELKGAGLGKSGSTPPSP