Scaffold Ga0210403_10000004

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000004
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 292171
• Total Scaffold Genes: 279
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 231 (82.80%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000274	Metagenome / Metatranscriptome	1399	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000552	Metagenome / Metatranscriptome	1033	Y
F003141	Metagenome / Metatranscriptome	505	Y
F003257	Metagenome / Metatranscriptome	497	Y
F005361	Metagenome / Metatranscriptome	403	Y
F007916	Metagenome / Metatranscriptome	342	Y
F085196	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_10000004132	F000536	GAG	MVELSPQQMKIIERLFEAGFRPVSIPPYENVLCMKKGDCAAVLAPVPQGGLMLAASPSYLVEGNLSVKLKRGSNEAFVWKKNELAATAERLSELEAFRRELNQILNS
Ga0210403_10000004148	F003257	AGGTGG	MQRTRYPERRRTTRLSLQIPVVVRCRLPEGETIDLKGSTYVVGANGALLLMDTPLIPGQNVRVFNEMTAESAECFVTSLREQRDRRFVGIGFANPNVDFWHIVFPKAGTRQAIRSSQTGGLVPPGFRSENPPQF
Ga0210403_1000000417	F005361	AGGAG	MGAETKAENNESRWKLSLDSWAVVVALLAALLIRAGVFKHIPW
Ga0210403_10000004189	F003141	GAG	VQVTSLRSGATPLREASVVEFGGTEHAIFLSSLPLEFDDRVRLEAAQDGRPAEATVIAVQYHEGRKAVAVRFSQSPCDWVTQP
Ga0210403_10000004204	F085196	GGGGG	MNEKTRSAISRREFARRAVMVSTAASLAPANLLCAEAPASLPQAQQVPNAPKLSLESQAEVDSRIQTILAQYGSRLSDAQKADIRRLATEAQPPLDRLRAYPTENGDGPALYLKPLMEREKKPTPAPAASKPPTAPKNS
Ga0210403_1000000432	F007916	GGAGG	VNRNVQAFLILERVAGREAFEVSALLRADGRFIGKTSLGTVAEGQEILLSLDWDQPSNRFVVSSQVAGSLPVLSFIPFAWPGVADAFVPLKLSIVKSFVVHSDGTDNTEAHENKN
Ga0210403_1000000438	F000552	GAGG	MEPMGRKLVWAERPNFQGWGCSECAWVFNPSWPLVGKSIDEMKTNFGLERDKEFASHVCAEHPRATKKPR
Ga0210403_1000000496	F000274	GGAGG	MKVKIAMSFLVLFALAGAAAQGTAQDTTKTTHKKTRTLTGCLQKGDDANEYKLTTTKGGTWEIKSDTVKLGNHVSHTVTITGVVSNAMMHGAKEDVKDEAKEHGMDKNSTEHGHMTVTYLKMVSESCSN