Scaffold Ga0210403_10000003

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 301208
• Total Scaffold Genes: 241
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 202 (83.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000438	Metagenome / Metatranscriptome	1143	Y
F000783	Metagenome / Metatranscriptome	893	Y
F000923	Metagenome / Metatranscriptome	833	Y
F001811	Metagenome / Metatranscriptome	631	Y
F002063	Metagenome / Metatranscriptome	597	Y
F005190	Metagenome	409	Y
F006031	Metagenome / Metatranscriptome	383	Y
F024754	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_10000003152	F000923	GAGG	MKTKDKSRKWMWGFLATVVALQAYFVWEILAAFALFFVGFAAIAAVIGSLYMMHRIWATAVEKLANSQHPVMVATRQGIDSVEDLARRPFRRPGSAPAR
Ga0210403_10000003172	F000783	GAGG	MAALASSWKRKRDDLKKRRDSLFEIYSRDPQNFHLAREIKDIDDDIAECTQHVEQERRAEQRAAAAADKVVTTPK
Ga0210403_10000003191	F006031	AGAAGG	MGKSSSSGESSSSKSLLFMMAAMFCGFGVLLGGGLLMASRVIHALQLRSEGDRTTVRTPIGDYRFEKAQQIGPGLPVYPQSALVLPGGPASHPLGDESQPQVVSSTYHSNSSREYVNNWYLEHLSPEFVRQDPGHKNLPEFFQQSHISDDDITFVGERGDQVRVVALENEDSGTKIILLRSVKPSSQTPAQPQTQSSSQSSTP
Ga0210403_10000003204	F024754	GAGG	LLWNEISGCDTLRRMYKRLLIFGITGLFFVLGLNYLVIYPLQQTVTRELERQDKVYWSTFNAVEQFGAQPDNASEQKAKAALDEARAKGLSKTRQLILQNYFQDLEHCYQGDRDACKKANSDMNDAIRAPR
Ga0210403_10000003220	F005190	GGAGG	MSDKIHDRAEQLIAQERVEGISPADHDWLSAHLQDCAQCANHARHTEHALRGLRTMAIPMPTGLASRTQFRVQLRLQEIREREPKRRALWLACVVSWAFGIVSAPYVWRLFQWFGERTGVPKLVWEVGFGLWWTIPALFFVIVVFMEKMRQSSESELTRQSK
Ga0210403_10000003232	F001811	AGG	MRDFSSSVLSCLERERLEEELSEARNRGRNVSRLRHLTPPERMVLEEREQAAQMRLRDHDAEHGCQR
Ga0210403_1000000339	F002063	GGAGG	MIAMLHFATLVIATMFAVAAAAAFNWLLLQATFRMMRPAAAKRIPARTALVRGTTELARAFAAQR
Ga0210403_1000000385	F000438	GAGG	MDKFEEIGRRLDEELTRLRRYVEEEVAPETERRTAQFLREVSEKLTQAASKLESRNVARNPQNPPNPPTS