Scaffold Ga0210403_10000001

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10000001
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 357644
• Total Scaffold Genes: 295
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 249 (84.41%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000678	Metagenome / Metatranscriptome	940	Y
F000783	Metagenome / Metatranscriptome	893	Y
F000923	Metagenome / Metatranscriptome	833	Y
F005419	Metagenome / Metatranscriptome	401	Y
F006031	Metagenome / Metatranscriptome	383	Y
F032792	Metagenome / Metatranscriptome	179	Y
F070346	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_10000001184	F000783	GAGG	MLAATGTWKKKRDDLKDKRNALFETYTKDPQNIHLAREIKDIDDEIADCTQHVEQERRAEQRAASPAAKLMTPSK
Ga0210403_10000001210	F000923	GAGG	MKNKDNGRKWMWWLLGAVVALQFFYVRELLAAFALFALGFAVIALAFGSLYMLHRTWVMAVERLAESKNPVMVSARQSMYAIEDLARRPFRRPGSATAR
Ga0210403_10000001219	F032792	GAG	MTWDAREKAYKAYVFGNDFPGALVETGRFEGDALVFRSEFPVEGATLKLRNVTRVTAPGKLDSEEYMTMPGAPESLLVRVQAKKR
Ga0210403_10000001289	F000678	AGGAG	MDQFEEFGKRIDQEFARLKSINSFEDFGKRVDEELKRVKSFVKEEVAPETEKRTAQFLREVSEKLTEAASWIEARNAARPAQPPKDAKS
Ga0210403_100000013	F006031	AGG	MGETQAMAKSASAGESSASKSLLFMMIAMTCGVCILVGGGFLMTSRLINTLALRNSSDKATVRTPLGDFRVDKAKETGPTLPVYPASTLVLPGTEAARLPSSDSLPQVVTSNYHTNSSREYVANWYAEHLSPEFVRQDSGPKNLPEAFRESHISEDDIAFVGERGDQIRVVVLGSDSMGTKIALLRSAKEAAH
Ga0210403_1000000162	F005419	AGGAGG	VAGSATEAVGQGKDPEVGRPSRGTRKVRAGQAGGVEFQRFFLAKTGGNSGVPEFSKEVPGEPEAMVESLKTGLSYFVVSEWRGVADFSGKKPQLGREAVRSTPKAG
Ga0210403_1000000167	F070346	GGAG	MKRFLAAKSPRSLLSFAEWGALIVLILASASFLFDLINRSIGWIIGLFRIPDELWKECSRWF