NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10294903

Scaffold Ga0210407_10294903


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10294903 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1266
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000427Metagenome / Metatranscriptome1151Y
F008916Metagenome / Metatranscriptome326Y
F032457Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_102949031F008916N/ADFDNLDATEKAGIEAALNRCRALAAQIASELRNKRPKLLLDKLSLADVCASLEQAVDVLGQKGRQPVENTPTSVAKQARHR
Ga0210407_102949032F032457GGAGMMLDTIEAEAALENCRALINRIDAGLSAEEPFVNVSSAAELLLYLEFAASALEETKITPTYH
Ga0210407_102949033F000427AGGMMTIHASRIAKGRRVKFTPQVIESIKKFVAAGISRDEIADRLGVTVGSLQVTCSRLGISLRRSYGSRHMADVSGRTIPVQCSVGSVHAREHKKVSKPAARAAPVTQFAITMRRHGKEKTTDIELSSPAIQLLALEATSRGLGIAELIGQVLVAAINKDMIQKILR
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