NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10194821

Scaffold Ga0210407_10194821


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10194821 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1573
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019891Metagenome / Metatranscriptome227Y
F057937Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_101948212F057937AGGMSRVIRTFRNANNEEVGRLTFEEKDDRLHIQSGAPPGIDRRFRTEKGAANWWESNVDPETGKIRR
Ga0210407_101948213F019891AGGAGMSDWSRDAALRFAALQKLRQVQDAKVIRDQKDLSFHIAKVWADLCELFRARCAEFNAEPGVTGILSCDTKRTQELKITRSDNAAMLRGAFDVKRHTIHFMGPNIGKEKSEIKIEVIEGSSTMRFVDILHRTLEPQDIVDISLTDLLQLN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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