NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10178294

Scaffold Ga0210407_10178294


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10178294 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1646
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002853Metagenome / Metatranscriptome526Y
F007488Metagenome / Metatranscriptome350Y
F032795Metagenome / Metatranscriptome179Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0210407_101782941F002853GGGGGMGRGARGQTQSLTDQQLNQTNALNQQLLGQRQSVGNLLTPQYQSILNNPGFSAADKAAITGQSQGALASAFDSLQQSAANRAARTGNSAGFSDLTDELARQKGIAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGVDSNLLGKTLGIPAELLNVRANASRNNGGFFSTLGSSL
Ga0210407_101782942F007488N/AMKIRAYEERDLEALRAIHARQGFGYAFPDLANPLFLTKLVLGREERGKGIAGAALLRLTAEAYLLLDPESGSPREKWQWLLGLHEATRRDALARGLEDVHTWLPPEIAKKFGKRLTRLGWVRDDEWTPYCRRLR
Ga0210407_101782943F106044GGAGMPNLTYNATWDFNPADAVTLNAAFTFDLQDPNDNQTVSAVLTTLQGRTPQVTLTQTDNATISVVVTI
Ga0210407_101782944F032795N/AFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVTFGSPATAVAGGGTSGPTPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQLVL

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