Scaffold Ga0210407_10153011

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0210407_10153011

Scaffold Ga0210407_10153011

Overview

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10153011 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1779
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005766	Metagenome / Metatranscriptome	391	Y
F095538	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_101530112	F095538	GAG	VIGPDSSAQARQCRQCGVAVLVGTGKRFLKRVIARENGGRGRDLLVTLFDQLIENSGAGAKTGFDLGEGMVPIGLTNDKIGRALQQRQERNQEKEQPATETAESEFQR
Ga0210407_101530114	F005766	N/A	VGASAGLRYRFGLGRQAPWVLLEDRFGYDRFHDTPQSGNDNVVSLRGGVALTERIALEGGYAFESFVAPNDFYDRQLHRADARMVFDVTSSLQLALGYSYQEGDVISYAVPPRPDIARFSVEREDQDEFGQPLRTAYKLLGRTHALSFSAAYQLTKHASVQLGYEYAITKHDPLEYENHLVAVKIAVAY

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.