NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10058253

Scaffold Ga0210407_10058253


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10058253 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2890
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002414Metagenome / Metatranscriptome561Y
F006480Metagenome / Metatranscriptome372Y
F072052Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100582531F002414N/AMILVVRETHDTPETVAHRLERAGGINRYGEANYRAMWGWNRLAWIGGKFEDRDEHGELLRERVELRWEPKYPAVN
Ga0210407_100582532F006480N/AMRRILIGGIALLLCGGISARSKRDPLMFVFLRVDHAQDVAILRPMIAPDIGVQLASGPRELKPGTVLQCAASLRDHDAIVETKIAKVTDLMLDCGEHKFVVKSLDFSPRGK
Ga0210407_100582534F072052N/ALSQAIRQDVETALKGDRQLTEQVAQILSAHRFDNETRGQVVRLIAERAQQLMPVAAKRVLNDWTQTTLAAHRSGSARTDAASTRREVPPAASSPGHAQAAARERGAERSLSTNQARPVDYRKLSDEQILDL
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