Basic Information | |
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Taxon OID | 3300020579 Open in IMG/M |
Scaffold ID | Ga0210407_10012387 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6341 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013479 | Metagenome / Metatranscriptome | 271 | Y |
F080381 | Metagenome | 115 | N |
F081834 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0210407_100123872 | F080381 | GGAGG | MNGKAWRVAAVSLLTGFMIGMPGAARAADGQDDDPALAALFEGAPAHPDQLFRVEWVASPGPSGRSRLEGSVHNDFGRTALNVQLRVIELDAAGETVSTVIGPTLERVPGQGRVPFDVLVPDHRRSYRVAVASFSFDFADPAAR |
Ga0210407_100123873 | F013479 | AGGAGG | MPTIRTLSMVVTLGLAVLCTTSPAAAYVIEALTSISADQATDKETLERAIRAAVDDIAAHAVAFTPTVVSLRDAKLIGDRIYLFVLLADEAGEAEIQVLETGTARSSTGTF |
Ga0210407_100123877 | F081834 | AGGAGG | MSGKAWLTVGLSVLLGIGVTGATPGMGVRAAQAESGIARGIVTGHGAQVQAARWGDENGEQGEVESPRWGDQSGEQGEVESPRWGDQNGEQGEVESPRSGYQGGDQTDAGSPRT |
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