Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10012128 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6408
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6408

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000781	Metagenome / Metatranscriptome	895	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F026617	Metagenome / Metatranscriptome	197	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1001212811	F026617	N/A	GRPPVNITYTGRKTATDNSRKWSPWSIAANCCALIERTNGTAVAALGGGLPGVGDAGATGKIYQLSDTQFSDDGAAIPSYYTTHFFPERAVESSLGLGAHRKLFSYLTMYVEGAGNLALTSFVDSESAATAQQPLGMSSPGLKDLELPINVLGERVAFQVGTNQAGAWFKVQRFAPSVRVDPWAPVRGVN
Ga0210407_100121284	F009917	AGGA	MGSSGWTYVVVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEKQGIHLEEQPMVNYVDLRNGGRHR
Ga0210407_100121286	F007488	N/A	MMRIRAYEESELEALRAIHSRQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPAIAQKFGKRLTRLGWIRDDEWTPYCKKLT
Ga0210407_100121287	F106044	GAGG	MPNLTSNATWDFNPGDTVTLNAAFTFDLQDPNDNQTVSGVLTTLQGRTPHVTLTQTDNATISVVVTI
Ga0210407_100121288	F000781	GAG	MLTVAQLAPLKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPMTFGSPATAVAGGGSSGPAPLPSSGSGALPNGLLRGGNGFGIVPGARVVKQAVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10012128

Overview

Ecosystem & Geography

Associated Families

Sequences