NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10006610

Scaffold Ga0210407_10006610


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10006610 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8849
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003414Metagenome / Metatranscriptome488Y
F062085Metagenome / Metatranscriptome131Y
F074441Metagenome / Metatranscriptome119Y
F084681Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100066102F003414N/AMILLCCAAYVLGGCSMRRRPDIPWASAVQVKPVTLQQTAETNDVCEDPLPELRFELPASSGRLIPGRITPPRPRGSMPPTATTGNDAEKTEAPTIVPQLTPQEFVAAQQQANESLATAEKNLGAARGKTLSAVQRDLVSKIQGFIKDAREAAQITDWSRARSLAKKAQVLSEELASSL
Ga0210407_100066105F084681AGGAGMATHEHRITPRFKLHTRLSFHRMETLTEGEHQARTINVSTRGVYFATNIILCVGEALEVLLEMPKRVTGVKAGIRRFAGRVTHIESANMLPGLSGIGVQLLYYERDLAGVPKPNVL
Ga0210407_100066106F074441N/AMTNHEALLRLSVDKNDHLAVTSLHENNAEIIRTTVMRYFGSGTAAENVEFELMKRMAGHARLYEDSEDLDVWLASCANTECDRMRNEAIHDKANTD
Ga0210407_100066107F062085GGAMEKLQAFQAAACEGGFVAIEESEGDTVLWLRKATVEAEDRICLDSLTNSATVYWATIPWKINSKTFREASALRAWILTRPGVLAS
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