Scaffold Ga0210407_10005342

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10005342
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9932
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y
F073888	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000534210	F000781	GGA	MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASNGWFDISVTDPSEARPGLFYFAESDITPAFGAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPTAVAGGGASGPAPLPSSGSGVFPNGVPRSGNGFGIHPGSRITRQSIL
Ga0210407_100053424	F073888	N/A	MPTRDWIRLAELTAALLLALAVFFSWRADRRDRSQLESELAATKQLLAAADTRQHDRDAQLAQTLATLAAEKRTVVTPAQIIHDLPTQLPLPSPIVLQSPPASPSSPSPKTNAVIPAEDLKPLYDFTIDCKACQSKLTTAQADLTDERQKTVALTRERDDALRIARGGSLLRRITRAAKWFLIGAAAGAVAAKAAH
Ga0210407_100053427	F000624	AGGA	MPTHWYAVLTAIFTIGVQFVIFLRWLHRRMRKDEIAHAFIHDIATNHLPHIYNALQQIASRQGIKLDDTPMVRFVDLNGHRRRR
Ga0210407_100053428	F002853	GGAGG	MGRGAQSQTRQLTDDQLASLNSLNQQFLGQQQQIGNTLLPQFQSILNNPGLSVADKAAVTGQSQGSLASAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQTQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRNNASRTTGNGFFSALGSGVGSALGALPGAFF
Ga0210407_100053429	F000703	N/A	MQIRQYQERDLDALRAIHATQGFDYALPDLQNPLFVTKLVLAQHARPSVVGAQHAATLQQPSTALGDLVEGDSQNADPAPSSDKILGAVLLRLTAEAYLLLDPRAGTPRERWQRLLALHAAAERDAWHRGLEDVHAWLPPPIAHKFGKRIQRLGWLRDDAWTPYCKKLSAGK