NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10004253

Scaffold Ga0210407_10004253


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10004253 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11346
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025691Metagenome / Metatranscriptome200Y
F085446Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100042534F085446GGAGGMLTWFRYAAASILFSLLLSAQQLPAPDKPSTVSHTPSNFPAEIPTDGVAVFVQNSGWEDLSQEIPSKIRTKRGLAGSFTYEVIPAVAIAEYSGQHAELQIEARRPVVSVCNFPSFRGGPVVVRLHPKKDLRELNAGRIPVFGAKIAEVKQSDVVPTEMAQPEGACRLLRPREDLPAGEYALMLPSQNFAIFAFTIANPPNANPATALKKP
Ga0210407_100042536F025691GAGGMTFLRKFLGLFIGLAVIALIVLIWQETAKITGEVSVAASTGAPVPLSGARLTLYKVTEEQEQRLSAALANLQQQNQQEKDANARVYPAESKDEMVRSNLVSYNNLSDTKLCFALEKVLDEIRKFAVRKETTDNQGHFGFRALPGHYYLEIVGQPNGQYIQFVEHVEPKWHTHFKLADPTCRYSMTN

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