Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10001826 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19105
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19105

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000885	Metagenome / Metatranscriptome	849	Y
F001619	Metagenome / Metatranscriptome	662	Y
F003257	Metagenome / Metatranscriptome	497	Y
F004677	Metagenome / Metatranscriptome	428	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000182612	F004677	AGGAG	VTRYRTQPPWEFLLSASRNSLQSYELTRLSHAANLRKEIGALLDQWLEENASAMVARWLMEQREHPSTSMDAAAETKMSGRHVVSDNFFADREAPPPANRGPA
Ga0210407_1000182615	F000188	GAGG	VSVKPEMVFDVCWEVYRGAREVLETKRGISALNMKDMGKYLWRPDIHPRLNEWVSDFALAGQAALDGPEWASRMVMFRVYYLGLAPYENVRHFLGLSEHTWVNWSEQVRHRCGKEMLSRGMFPPRKYFASGT
Ga0210407_1000182624	F000885	AGGAG	MASAKTVFIGEVTQVAGIASAVTGVVLSLHHWPAAAALIGGGVAFYIGKKLRAQ
Ga0210407_1000182626	F001619	AGG	MFRFLTEIVRSRYVGLLEADVARLRAENRALMNSLLGTAGFPPVEFPEVPQPQPLPRLRKRSWHQIQAWRGSRAGRESAVDLDGALPNRANGPVSHS
Ga0210407_100018264	F003257	N/A	MSPQGAYMQRTRYPERRRTMRLSLQIPLTVRCRLHEGETIDLQASTYVVGANGALLLMDTPLIPGQTVKVFNEHTAKSIDCVVTSLREKRERRFVGIAFVNPDVDFWHIVFPKSGTRQAIRSSQTGSLMPPGIRSDSAQQF
Ga0210407_100018268	F000536	N/A	MVELTPQQMQIMERLFAAGFRPVAIPFYENALCVKKGDCAAVLGPIPNGGLKNLASPSYMVGGNLSVKLKRGSREVFVWKKTEIDATPDRVSELESFRREIGEILQQASVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10001826

Overview

Ecosystem & Geography

Associated Families

Sequences