Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10001555 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21225
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

21225

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002583	Metagenome / Metatranscriptome	546	Y
F003099	Metagenome / Metatranscriptome	507	Y
F013281	Metagenome / Metatranscriptome	272	Y
F064918	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_100015552	F003099	GAGG	LSLTLILFFGSVAVLLLGLGRALWKPQERKNLERDPRWLEERDQCHTNYLPQIRQALAAADYDFLSKRASRGTQRRVRHERLNVALAYLGALRGDFESLLRTARVIAVLSPEVAGAHEFERLRLTAKFAWRYRMIRWKLLTGMTPLAQLAGLSDLVSGLSVRLEQAMKEIGERVAVAAELASSMNRRGMDAV
Ga0210407_1000155520	F002583	GGAGG	MKRLVPIPCGCAEHLKSAEETGFGYQVVSVQLKDGRIFEQVAISEGCIIEVRGYKEIPFSADDVASVSVNHKRWNFRDQSDTRAKSRAATA
Ga0210407_100015553	F013281	N/A	MMWAVNTATGVALLLLLAVRKNYRIYPAFTFYIFVNVAVAASLFIVYRLWGFSSTVSWRIGWATQAVTVCARAWAVIEICRRFLSRYPGIWALAQRVLLACAGLVLLYSGVAVRHQWNLALPTVDRALELAIAAVIVVLFLFARYYGLQPERTDRSLALGLCLYSCFRVLNDTISDRYLYDYAKVWNLLGMLAFFASLVLWTWALRKSQRETAAEEKLLPLGVYQSFAPQINMRLQLLNDQVDKIFSSEGTPH
Ga0210407_100015555	F064918	AGG	MRTLTQLQQNRRVIQDFTLTTLAGIPGLFSRLTYIASLRDLSSGRYQHAGLAALYPDAAIQQALQVCHEQIFERILETPLSSQEEDLRACLAGMEGGLSVVISHWRRIEAYRVLQPEAAPEYLKELFCSNLRALLEILDEERSPARSSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10001555

Overview

Ecosystem & Geography

Associated Families

Sequences