Scaffold Ga0210407_10001455

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10001455
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22171
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002000	Metagenome / Metatranscriptome	606	Y
F025089	Metagenome / Metatranscriptome	203	Y
F027913	Metagenome	193	Y
F053237	Metagenome / Metatranscriptome	141	Y
F105555	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000145514	F053237	GAGG	MNNIGQPAQPNRELVERAIAEVLGIAQRQGITPADFVRMLDSGMRMSDFLTAMDPLTNSYRAIGGDCSW
Ga0210407_1000145515	F027913	GAGG	MSYSESRNHFEKARINTADAVTIEMLDGLKHLSHAIEEDFRTLEQHIRDIQESADSRKVR
Ga0210407_1000145527	F105555	AGGAGG	MKTNEESKHEEQLPQSNGPSRKKPYEAPKLTILKLDRAKAQLIARALAGDPDAEDLLEAG
Ga0210407_100014554	F002000	AGGAG	MLKAVKESVHRMTNQLQLISGYLEMKVYPKALGKTRETMKELHTLATSLTGLTHVGMTVPKDGAVVVPHGSTVVSHEDVNVDVGSNEVRAVDKNEVRVGYGEDNPKTK
Ga0210407_100014559	F025089	GAGG	VSSIPLFPIQRLIHDVTGDLHVVVAASEHGYRETALEACLLAKEKLQAIREELLRPEPGIADPRYDYDS